forked from kamba4/sunders
		
	Containerizes application #12
					 3 changed files with 7 additions and 7 deletions
				
			
		
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						4c28ff9b0a
					
				
			
		|  | @ -28,5 +28,5 @@ cat seq_list.txt | xargs -n1 -P10 -I{} bash -c ' | ||||||
|   path=$(echo "$f" | sed -E "s#(...)(...)(...)#\1/\2/\3#") |   path=$(echo "$f" | sed -E "s#(...)(...)(...)#\1/\2/\3#") | ||||||
|   url="${REPLICATE_URL}/${path}.osc.gz" |   url="${REPLICATE_URL}/${path}.osc.gz" | ||||||
|   echo "Downloading $url" |   echo "Downloading $url" | ||||||
|   curl -sL "$url" -o "${seqnum}.osc.gz" && gunzip "${seqnum}.osc.gz" && python filter_osc.py ${seqnum} && rm ${seqnum}.osc  |   curl -sL "$url" -o /migrations/"${seqnum}.osc.gz" && gunzip /migrations/"${seqnum}.osc.gz" && python filter_osc.py ${seqnum} && rm /migrations/${seqnum}.osc  | ||||||
| ' _ {} | ' _ {} | ||||||
|  |  | ||||||
|  | @ -50,21 +50,21 @@ curSeqNum=$lastSeqNum | ||||||
| curSeqNum=$(( $curSeqNum + 1 )) | curSeqNum=$(( $curSeqNum + 1 )) | ||||||
| while [ $curSeqNum -lt $newSeqNum ] | while [ $curSeqNum -lt $newSeqNum ] | ||||||
| do | do | ||||||
|   if [ -e "${curSeqNum}_filtered.osc" ] |   if [ -e /migrations/"${curSeqNum}_filtered.osc" ] | ||||||
|   then |   then | ||||||
|    |    | ||||||
| 
 | 
 | ||||||
|   rm "change_file.osc" |   rm "change_file.osc" | ||||||
|   cp ${curSeqNum}_filtered.osc change_file.osc |   cp /migrations/${curSeqNum}_filtered.osc change_file.osc | ||||||
| 
 | 
 | ||||||
|   php create_camera_update_statements.php $curSeqNum |   php create_camera_update_statements.php $curSeqNum | ||||||
|   rm ${curSeqNum}_filtered.osc |   rm /migrations/${curSeqNum}_filtered.osc | ||||||
|   curSeqNum=$(( $curSeqNum + 1 )) |   curSeqNum=$(( $curSeqNum + 1 )) | ||||||
|   else |   else | ||||||
|   path=$(echo "$(printf "%09d" "$curSeqNum")" | sed -E "s#(...)(...)(...)#\1/\2/\3#") |   path=$(echo "$(printf "%09d" "$curSeqNum")" | sed -E "s#(...)(...)(...)#\1/\2/\3#") | ||||||
|   url="${REPLICATE_URL}/${path}.osc.gz" |   url="${REPLICATE_URL}/${path}.osc.gz" | ||||||
|   echo $url |   echo $url | ||||||
|   curl -sL "$url" -o "$curSeqNum.osc.gz" && gunzip "$curSeqNum.osc.gz" && python filter_osc.py ${curSeqNum} && rm ${curSeqNum}.osc  |   curl -sL "$url" -o /migrations/"$curSeqNum.osc.gz" && gunzip /migrations/"$curSeqNum.osc.gz" && python filter_osc.py ${curSeqNum} && rm /migrations/${curSeqNum}.osc  | ||||||
|   fi |   fi | ||||||
| done | done | ||||||
| 
 | 
 | ||||||
|  |  | ||||||
|  | @ -9,8 +9,8 @@ def open_maybe_gzip(filename, mode="rb"): | ||||||
|     return open(filename, mode) |     return open(filename, mode) | ||||||
| 
 | 
 | ||||||
| def process_file(number): | def process_file(number): | ||||||
|     input_file = f"{number}.osc" |     input_file = f"/migrations/{number}.osc" | ||||||
|     filtered_file = f"{number}_filtered.osc" |     filtered_file = f"/migrations/{number}_filtered.osc" | ||||||
|     deleted_file = f"/migrations/{number}_deleted.osc" |     deleted_file = f"/migrations/{number}_deleted.osc" | ||||||
| 
 | 
 | ||||||
|     # --- open input and outputs --- |     # --- open input and outputs --- | ||||||
|  |  | ||||||
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